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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 31 19

  2. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 31 10

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 17 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 12 3

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 10 4

Repositories

Showing 10 of 581 repositories
  • thalmanac Public
    AllenNeuralDynamics/thalmanac’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 13, 2026
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Mar 13, 2026
  • parallax Public

    Automatic detection of probe position from multiple camera views

    AllenNeuralDynamics/parallax’s past year of commit activity
    Python 4 MIT 1 8 2 Updated Mar 13, 2026
  • package-brain-atlas-assets Public

    Reorganize various brain atlas data assets into a standard organization and metadata convention.

    AllenNeuralDynamics/package-brain-atlas-assets’s past year of commit activity
    Python 0 MIT 0 4 2 Updated Mar 13, 2026
  • aind-metadata-manager Public

    Metadata manager for pipeline to ensure metadata are in derived assets

    AllenNeuralDynamics/aind-metadata-manager’s past year of commit activity
    Python 0 MIT 0 2 4 Updated Mar 13, 2026
  • ophys-slap2-analysis Public

    Data reduction, preprocessing, and analysis for SLAP2 microscopes

    AllenNeuralDynamics/ophys-slap2-analysis’s past year of commit activity
    Jupyter Notebook 3 2 2 2 Updated Mar 13, 2026
  • AllenNeuralDynamics/aind-fiber-photometry-standalone-pipeline’s past year of commit activity
    Nextflow 0 0 0 0 Updated Mar 13, 2026
  • aind-hcr-data-loader Public

    Data loading for AIND HCR datasets (v1.0)

    AllenNeuralDynamics/aind-hcr-data-loader’s past year of commit activity
    Jupyter Notebook 0 MIT 0 2 1 Updated Mar 13, 2026
  • posetail Public
    AllenNeuralDynamics/posetail’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Mar 13, 2026
  • aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    AllenNeuralDynamics/aind-ephys-pipeline’s past year of commit activity
    Nextflow 31 MIT 10 18 3 Updated Mar 13, 2026

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