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@BirolLab

Birol Lab

Bioinformatics Technology Lab

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  1. abyss abyss Public

    🔬 Assemble large genomes using short reads

    C++ 328 111

  2. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 292 64

  3. straglr straglr Public

    Tandem repeat expansion detection or genotyping from long-read alignments

    Python 147 14

  4. RNA-Bloom RNA-Bloom Public

    🌺 reference-free transcriptome assembly for short and long reads

    Java 108 9

  5. ntHash ntHash Public

    Fast hash function for DNA/RNA sequences

    C++ 106 15

  6. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 103 2

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