BIOSCAN
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BIOSCAN-1M
BIOSCAN-1M PublicA dataset of 1M insect specimens with DNA barcodes, taxonomy, and images.
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BIOSCAN-5M
BIOSCAN-5M PublicA multimodal dataset of 5M insect specimens for biodiversity research.
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BarcodeBERT
BarcodeBERT PublicA transformer model for DNA barcode representation learning and taxonomic classification.
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BarcodeMamba
BarcodeMamba PublicA performant and efficient foundation model for DNA barcodes in biodiversity analysis.
Repositories
- BarcodeBERT Public
A transformer model for DNA barcode representation learning and taxonomic classification.
bioscan-ml/BarcodeBERT’s past year of commit activity - bioscan-ml-catalog Public
A catalog aggregating BIOSCAN-ML datasets, models, and code from HuggingFace and GitHub.
bioscan-ml/bioscan-ml-catalog’s past year of commit activity - bioscan-croptool Public
A tool to automatically detect and crop insect regions from images using deep learning.
bioscan-ml/bioscan-croptool’s past year of commit activity - BarcodeMAE Public
A masked autoencoder for enhancing DNA foundation models by addressing masking inefficiencies.
bioscan-ml/BarcodeMAE’s past year of commit activity - zs-ssl-clustering Public Forked from scottclowe/zs-ssl-clustering
A zero-shot clustering toolkit for evaluating SSL embeddings on BIOSCAN-5M data.
bioscan-ml/zs-ssl-clustering’s past year of commit activity - BarcodeMamba Public
A performant and efficient foundation model for DNA barcodes in biodiversity analysis.
bioscan-ml/BarcodeMamba’s past year of commit activity
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