Register CLEM colours by tieneupin · Pull Request #739 · DiamondLightSource/python-murfey

Added logic to optionally insert collection mode and colour flags for the Atlas and GridSquare tables in ISPyB for the CLEM workflow

tieneupin

committed

Fixed 'register_atlas_update' test

tieneupin

committed

Test call contents of 'register_data_collection_group'

tieneupin

committed

Fixed 'register_preprocessing_results' tests

tieneupin

committed

Assign color flags to attributes directly instead of using 'setattr'

tieneupin

committed

Store color flags and collection mode in variables instead of repeating the 'get' call

tieneupin

committed

Assign color flags to attributes directly instead of using 'setattr'

tieneupin

committed

Database table classes get instantiated with different IDs, and do not match

tieneupin

committed

Forgot to pass 'color_flags' parameter to 'insert_grid_square' function

tieneupin

committed

Iteratively update color flaggs using 'setattr'

tieneupin

committed

Reverted import

tieneupin

committed

Missed inserting a 'color_flag' field in an if-else block branch

tieneupin

committed

remove empty dict and list defaults

d-j-hatton

authored and

tieneupin

committed

Added unit test for '_get_color_flags'

tieneupin

committed

Changed '_get_color_flags' to overwrite all the colour flags instead of just activating the ones it receives; fixed colour flag and collection mode insertion logic for the Atlas

tieneupin

committed

Add columns to CLEMImageSeries table to keep track of colours present in the dataset

tieneupin

committed

Added column to CLEMImageSeries table to keep track of collection mode used for dataset

tieneupin

committed

Register colours and collection mode in CLEMImageSeries table upon arrival of message, then translate it across to Atlas and GridSquare tables in ISPyB

tieneupin

committed

Unpacked dictionary incorrectly

tieneupin

committed

Fixed error with calculating the location of ROIs on the atlas image

tieneupin

committed

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Register CLEM colours#739

Register CLEM colours#739
tieneupin wants to merge 20 commits intomainfrom
register-clem-colours

Commits on Feb 10, 2026

Added logic to optionally insert collection mode and colour flags for the Atlas and GridSquare tables in ISPyB for the CLEM workflow

Fixed 'register_atlas_update' test

Test call contents of 'register_data_collection_group'

Fixed 'register_preprocessing_results' tests

Assign color flags to attributes directly instead of using 'setattr'

Store color flags and collection mode in variables instead of repeating the 'get' call

Assign color flags to attributes directly instead of using 'setattr'

Database table classes get instantiated with different IDs, and do not match

Forgot to pass 'color_flags' parameter to 'insert_grid_square' function

Iteratively update color flaggs using 'setattr'

Reverted import

Missed inserting a 'color_flag' field in an if-else block branch

remove empty dict and list defaults

Added unit test for '_get_color_flags'

Changed '_get_color_flags' to overwrite all the colour flags instead of just activating the ones it receives; fixed colour flag and collection mode insertion logic for the Atlas

Add columns to CLEMImageSeries table to keep track of colours present in the dataset

Added column to CLEMImageSeries table to keep track of collection mode used for dataset

Register colours and collection mode in CLEMImageSeries table upon arrival of message, then translate it across to Atlas and GridSquare tables in ISPyB

Unpacked dictionary incorrectly

Fixed error with calculating the location of ROIs on the atlas image